Stem-loop lja-MIR11162

Accession

MI0035938

Description

Lotus japonicus lja-MIR11162 precursor miRNA

Sequence

ggauuccuucaugagaagacuugaaaaagugacaaagguaucuagcuaugccggauaaugacaaaaauaagcauugguaucuaacuugcuacuuacacuuuguuuaccaaugcuuauuuucaucaauauuuagcauAGCUAGAUACCUUCGUCACUUUGUcaagucuuccauaaaggaaucc
(((((((((.(((.((((((((((.((((((((.(((((((((((((((((.(((((.(((..((((((((((((((((..(((..((.......))..)))..))))))))))))))))..))).))))).))))))))))))))))).)))))))).))))))))))))).)))))))))

Structure

         c   a          a        a                 c     a   ca                uc   cu  cu 
ggauuccuu aug gaagacuuga aaagugac aagguaucuagcuaugc ggaua uga  aaaauaagcauuggua  uaa  ug  a
||||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||| |||  ||||||||||||||||  |||  ||  c
ccuaaggaa uac cuucugaacU UUUCACUG UUCCAUAGAUCGAuacg uuuau acu  uuuuauucguaaccau  guu  ac  u
         a   -          G        C                 a     a   ac                uu   uc  au 

Annotation confidence Not enough data

Genome context

Chr1: 42835069-42835250 [-]

Mature lja-miR11162-3p

• Accession: MIMAT0043960
• Description: Lotus japonicus lja-miR11162-3p mature miRNA
• Sequence: 137 - AGCUAGAUACCUUCGUCACUUUGU - 160
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256