Stem-loop lja-MIR11149b

Accession

MI0035931

Description

Lotus japonicus lja-MIR11149b precursor miRNA

Sequence

acacaaucauuuaaucacaacuuuucauuuugcuagcuuaaaauuaauuuuaaauuuaauaauauuuaaaaugaaaAAUAGAAGGUUGUGAUUGAAUGAUugugu
(((((((((((((((((((((((((.(((((...............(((((((((........)))))))))..))))).)))))))))))))))))))))))))

Structure

                         c     gcuagcuuaaaauua         uua 
acacaaucauuuaaucacaacuuuu auuuu               auuuuaaau   a
||||||||||||||||||||||||| |||||               |||||||||    
uguguUAGUAAGUUAGUGUUGGAAG UAAaa               uaaaauuua   u
                         A     -------------ag         uaa 

Annotation confidence Not enough data

Genome context

Chr1: 61349850-61349954 [+]

Mature lja-miR11149b-3p

• Accession: MIMAT0043953
• Description: Lotus japonicus lja-miR11149b-3p mature miRNA
• Sequence: 77 - AAUAGAAGGUUGUGAUUGAAUGAU - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256