Stem-loop lja-MIR11103d

Accession

MI0035920

Description

Lotus japonicus lja-MIR11103d precursor miRNA

Sequence

1292 reads, 135.0 reads per million, 8 experiments

ucuccaguggauuuuccucaaguuuucucuaguggacauuuguggcgguUUGGAACCGCCACAAAAUGUUGGAugcugccacaaaaucugucaauuuuuugcagcaccauuuuguggcagcuucaaacauuuuauggcgguuccaaaccgccacaaaauuCCACUGGAGAAAACAUGAGgaaaauccacuggaga
((((((((((((((((((((.(((((((((((((((..(((((((((((((((((((((((.((((((((.((.((((((((((((((((.(((....))))))....))))))))))))).)).)))))))).)))))))))))))))))))))))..))))))))))))))).))))))))))))))))))))

Structure

                    a               ca                       C        G  u             ----   u   u 
ucuccaguggauuuuccuca guuuucucuagugga  uuuguggcgguUUGGAACCGCCA AAAAUGUU GA gcugccacaaaau    cug caa u
|||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||| || |||||||||||||    ||| |||  
agaggucaccuaaaagGAGU CAAAAGAGGUCACCu  aaacaccgccaaaccuuggcggu uuuuacaa cu cgacgguguuuua    gac guu u
                    A               ua                       a        a  u             ccac   -   u 

Annotation confidence Low

Genome context

Chr4: 37779812-37780006 [-]

Mature lja-miR11103d-5p

• Accession: MIMAT0043942
• Description: Lotus japonicus lja-miR11103d-5p mature miRNA
• Sequence: 50 - UUGGAACCGCCACAAAAUGUUGGA - 73
• Evidence: experimental ; Illumina [1]

Mature lja-miR11103d-3p

• Accession: MIMAT0054711
• Description: Lotus japonicus lja-miR11103d-3p mature miRNA
• Sequence: 161 - CCACUGGAGAAAACAUGAG - 179
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256