Stem-loop lja-MIR11103d

Accession

MI0035920

Description

Lotus japonicus lja-MIR11103d precursor miRNA

Sequence

ucuccaguggauuuuccucaaguUUUCUCUAGUGGACAUUUGUGGCgguuuggaaccgccacaaaauguuggaugcugccacaaaaucugucaauuuuuugcagcaccauuuuguggcagcuucaaacauuuuauggcgguuccaaaccgccacaaaauuccacuggagaaaacaugaggaaaauccacuggaga
((((((((((((((((((((.(((((((((((((((..(((((((((((((((((((((((.((((((((.((.((((((((((((((((.(((....))))))....))))))))))))).)).)))))))).)))))))))))))))))))))))..))))))))))))))).))))))))))))))))))))

Structure

                    a               CA                       c        g  u             ----   u   u 
ucuccaguggauuuuccuca guUUUCUCUAGUGGA  UUUGUGGCgguuuggaaccgcca aaaauguu ga gcugccacaaaau    cug caa u
|||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||| |||||||| || |||||||||||||    ||| |||  
agaggucaccuaaaaggagu caaaagaggucaccu  aaacaccgccaaaccuuggcggu uuuuacaa cu cgacgguguuuua    gac guu u
                    a               ua                       a        a  u             ccac   -   u 

Annotation confidence Not enough data

Genome context

Chr4: 37779812-37780006 [-]

Mature lja-miR11103d-5p

• Accession: MIMAT0043942
• Description: Lotus japonicus lja-miR11103d-5p mature miRNA
• Sequence: 24 - UUUCUCUAGUGGACAUUUGUGGC - 46
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256