Stem-loop lja-MIR11083f

Accession

MI0035913

Description

Lotus japonicus lja-MIR11083f precursor miRNA

Sequence

augcaugguugcuuauuggguugcuuaaaugcuauucuggugggcccagacugccacaugGGAUUUAAGCAACUCAUAAGCAAcccaugcau
((((((((((((((((.(((((((((((((.((((..((((((.......)))))).)))).))))))))))))))))))))).))))))))

Structure

        -        u             g    uc      gc 
augcaugg uugcuuau ggguugcuuaaau cuau  uggugg  c
|||||||| |||||||| ||||||||||||| ||||  ||||||  c
uacguacc AACGAAUA CUCAACGAAUUUA Ggua  accguc  a
        c        -             G    -c      ag 

Annotation confidence Not enough data

Genome context

Chr2: 18011268-18011359 [+]

Mature lja-miR11083f-3p

• Accession: MIMAT0043933
• Description: Lotus japonicus lja-miR11083f-3p mature miRNA
• Sequence: 61 - GGAUUUAAGCAACUCAUAAGCAA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256