Stem-loop lja-MIR11122

Accession

MI0035859

Description

Lotus japonicus lja-MIR11122 precursor miRNA

Sequence

aaagaaacuugaccaugucaaccuucuccauuuuuaaauugauucuugaguuuuauuucuguaauaauugaagaaauaaagaaaaaucaaagugaUUUAAGUUGGGGAAGUUUGACauggucaauuuuuuuu
(((((((.(((((((((((((.((((((((..((((((((.(((.((((..(((((((((...........)))))))))......))))))))))))))).)))))))).))))))))))))).)))))))

Structure

       c             c        uu        g   c    ----gu         guaa 
aaagaaa uugaccaugucaa cuucucca  uuuaaauu auu uuga      uuuauuucu    u
||||||| ||||||||||||| ||||||||  |||||||| ||| ||||      |||||||||    a
uuuuuuu aacugguaCAGUU GAAGGGGU  GAAUUUag uga aacu      aaauaaaga    a
       u             U        -U        -   -    aaaaag         aguu 

Annotation confidence Not enough data

Genome context

Chr1: 28484493-28484624 [+]

Mature lja-miR11122-3p

• Accession: MIMAT0043861
• Description: Lotus japonicus lja-miR11122-3p mature miRNA
• Sequence: 96 - UUUAAGUUGGGGAAGUUUGAC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256