Stem-loop lja-MIR398

Accession

MI0035857

Description

Lotus japonicus lja-MIR398 precursor miRNA

Literature search

1 open access papers mention lja-MIR398
(2 sentences)

Sequence

gauuguuuaucucagagGAGUGAGCUUAAGAACACAAGCugcauugguuugaauuguuauaucauauacuagaaucuaguauaucuuuauguuacuaauuuaucUUGUGUUCUCAGGUCACCCCUuugagguaaccuguuc
......((((((((((((.((((.((..((((((((((.((.((((((.........((((..(((((((((...)))))))))...))))..)))))).)).)))))))))).)).)))).)))))))))))).......

Structure

-gauugu            A    G  UA          C  c      uugaauugu    -uc         a 
       uuaucucagagG GUGA CU  AGAACACAAG ug auuggu         uaua   auauacuag  
       |||||||||||| |||| ||  |||||||||| || ||||||         ||||   ||||||||| a
       aauggaguuUCC CACU GA  UCUUGUGUUc au uaauca         guau   uauaugauc  
cuugucc            C    G  -C          u  u      -------uu    uuc         u 

Annotation confidence Not enough data

Genome context

Chr3: 16612795-16612935 [+]

Mature lja-miR398-5p

• Accession: MIMAT0043858
• Description: Lotus japonicus lja-miR398-5p mature miRNA
• Sequence: 18 - GAGUGAGCUUAAGAACACAAGC - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR398-3p

• Accession: MIMAT0043859
• Description: Lotus japonicus lja-miR398-3p mature miRNA
• Sequence: 105 - UUGUGUUCUCAGGUCACCCCU - 125
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256