Stem-loop lja-MIR477

Accession

MI0035836

Description

Lotus japonicus lja-MIR477 precursor miRNA

Sequence

guagcauuuauugcucACUCUCCCUCAAGGGCUUCUGAaaucgccuccaaagaagcuagucUGAAGUUCUUAGGGAGAGUGGuuaauauuuguuac
((((((..(((((.(((((((((((.(((((((((.((....((.((....)).))...)).)))))))))))))))))))).)))))..))))))

Structure

      uu     c           C         U  aauc  c  c 
guagca  uauug ucACUCUCCCU AAGGGCUUC GA    gc uc a
||||||  ||||| ||||||||||| ||||||||| ||    || ||  
cauugu  auaau GGUGAGAGGGA UUCUUGAAG cu    cg ag a
      uu     u           -         U  -gau  a  a 

Annotation confidence Not enough data

Genome context

Chr2: 31876490-31876585 [+]

Mature lja-miR477-5p

• Accession: MIMAT0043828
• Description: Lotus japonicus lja-miR477-5p mature miRNA
• Sequence: 17 - ACUCUCCCUCAAGGGCUUCUGA - 38
• Evidence: experimental ; Illumina [1]

Mature lja-miR477-3p

• Accession: MIMAT0043829
• Description: Lotus japonicus lja-miR477-3p mature miRNA
• Sequence: 62 - UGAAGUUCUUAGGGAGAGUGG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256