Stem-loop lja-MIR11109

Accession

MI0035833

Description

Lotus japonicus lja-MIR11109 precursor miRNA

Sequence

cuuuuuaaaacucuuUCAUUGAUUGGUUGAAAUUCAugugaauccacuuaauuggaaggguuguccauauuuuuaguagacuccacauggauuuuaaccaaacaaugagagagcguugaagag
((((((((..(((((((((((.((((((((((((((((((..((((......)))).(((((..(.(......).)..))))))))))))))))))))))).)))))))))))..))))))))

Structure

        aa           A                  aauccacuuaauuggaa     gu c ua 
cuuuuuaa  cucuuUCAUUG UUGGUUGAAAUUCAugug                 ggguu  c a  u
||||||||  ||||||||||| ||||||||||||||||||                 |||||  | |   
gagaaguu  gagagaguaac aaccaauuuuagguacac                 cucag  g u  u
        gc           a                  -----------------     au a uu 

Annotation confidence Not enough data

Genome context

Chr1: 49169364-49169486 [+]

Mature lja-miR11109-5p

• Accession: MIMAT0043824
• Description: Lotus japonicus lja-miR11109-5p mature miRNA
• Sequence: 16 - UCAUUGAUUGGUUGAAAUUCA - 36
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256