Stem-loop lja-MIR11107a

Accession

MI0035826

Description

Lotus japonicus lja-MIR11107a precursor miRNA

Sequence

26604 reads, 2551.0 reads per million, 9 experiments

uccugcggaUUUGGCCAAAUAAUACACUGAACUaaccaccuaaauacacaugacuaaccauaaagcacauaaccguguaaacucaguugaaauuccuaaauucaauuuuacacgguucugugcuuuaugguuagucauguguaUUUAGGUGGUUAGUUCAGUGUauuauuuggccaaauccguagga
(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((....((((((.........))))))))))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                                     u           cuca      auu 
uccugcggaUUUGGCCAAAUAAUACACUGAACUaaccaccuaaauacacaugacuaaccauaaagcaca aaccguguaaa    guugaa   c
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    ||||||   c
aggaugccuaaaccgguuuauuaUGUGACUUGAUUGGUGGAUUUauguguacugauugguauuucgugu uuggcacauuu    uaacuu   u
                                                                     c           ----      aaa 

Annotation confidence Low

Genome context

Chr2: 36247474-36247660 [+]

Mature lja-miR11107a-5p

• Accession: MIMAT0043813
• Description: Lotus japonicus lja-miR11107a-5p mature miRNA
• Sequence: 10 - UUUGGCCAAAUAAUACACUGAACU - 33
• Evidence: experimental ; Illumina [1]

Mature lja-miR11107a-3p

• Accession: MIMAT0043814
• Description: Lotus japonicus lja-miR11107a-3p mature miRNA
• Sequence: 144 - UUUAGGUGGUUAGUUCAGUGU - 164
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256