Stem-loop lja-MIR11105a

Accession

MI0035821

Description

Lotus japonicus lja-MIR11105a precursor miRNA

Sequence

ugauaccauGUAAGAUUGGAUACUCUCACCauaaauugugugugagguggacaauauuauuuauauua
(((((....((((.((((..(((.(((((((((...)))).))))))))..)))).))))...)))))

Structure

     ccau    G    GA   U     -    a 
ugaua    GUAA AUUG  UAC CUCAC Caua  
|||||    |||| ||||  ||| ||||| |||| a
auuau    uauu uaac  gug gagug gugu  
     -auu    a    ag   -     u    u 

Annotation confidence Not enough data

Genome context

Chr1: 31454366-31454433 [+]

Mature lja-miR11105a-5p

• Accession: MIMAT0043807
• Description: Lotus japonicus lja-miR11105a-5p mature miRNA
• Sequence: 10 - GUAAGAUUGGAUACUCUCACC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256