Stem-loop lja-MIR11101a

Accession

MI0035812

Description

Lotus japonicus lja-MIR11101a precursor miRNA

Sequence

gaguuugcucaaaauuuuggugauauaacucaaaauguuauuccucucauuucauuCGAGAAACAACAUUUUGGGGGgccucuguuaacaccaaaauuucuagcuuuggaaauuu
......(((..(((((((((((..(((((.......))))).......................((((....((....))..))))..)))))))))))..)))...........

Structure

-----gaguuu   ca           auauaacucaaaauguuauuccucucauuucauuCGAGAAAC    UUUU  G 
           gcu  aaauuuuggug                                          AACA    GG G
           |||  |||||||||||                                          ||||    ||  
           cga  uuuaaaaccac                                          uugu    cc G
uuuaaagguuu   uc           ----------------------------------------aa    --cu  g 

Annotation confidence Not enough data

Genome context

Chr2: 39364985-39365099 [-]

Mature lja-miR11101a-3p

• Accession: MIMAT0043796
• Description: Lotus japonicus lja-miR11101a-3p mature miRNA
• Sequence: 57 - CGAGAAACAACAUUUUGGGGG - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256