Stem-loop lja-MIR11091

Accession

MI0035799

Description

Lotus japonicus lja-MIR11091 precursor miRNA

Sequence

ugucucuuguauauaucuacauuuuauuuaauuucuugauucauuucauuaaacauguguguuaggauuugagggaggauuuugcucuaccaugcuaggagcuagcagguagguuugggggcgaauuuacacuauguuugguugugaagagagagauagAGAAGAGAGAAGUUGAGUAGAgagaaauaggugagagaua
(((((((((..(((.(((...((((((((((((((((..((((((((((((((((((((((.((((((((......))))))))..(((((.((((((...)))))))))))(((((....))))).))))).)))))))))..........)))))...)))..))))))))))))))))))).)))..)))))))))

Structure

         ua   a   aca                ga   ---     ----------         -     uuaggauuugagggaggauuuugcu     a      g 
ugucucuug  uau ucu   uuuuauuuaauuucuu  uuc   auuuc          auuaaacau gugug                         cuacc ugcuag  
|||||||||  ||| |||   ||||||||||||||||  |||   |||||          ||||||||| |||||                         ||||| |||||| a
auagagagu  aua aga   gAGAUGAGUUGAAGAG  AAG   uagag          ugguuugua cacau                         gaugg acgauc  
         gg   a   ---                AG   Aga     agagaagugu         u     ----------uuaagcggggguuug     -      g 

Annotation confidence Not enough data

Genome context

Chr0: 31264560-31264758 [-]

Mature lja-miR11091-3p

• Accession: MIMAT0043779
• Description: Lotus japonicus lja-miR11091-3p mature miRNA
• Sequence: 160 - AGAAGAGAGAAGUUGAGUAGA - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256