Stem-loop lja-MIR7526j

Accession

MI0035784

Description

Lotus japonicus lja-MIR7526j precursor miRNA

Sequence

2209 reads, 183.0 reads per million, 9 experiments

uaacuaccgcagucaagauagcaguaacuuccgcUAUCAAGAUAGCUGUAACUuccgcuaucaagauagcuguaacugcuaucuuaauAGCGGAAGUUACAGCUACCUUGAUagcggacguuacagcuauuuuaauugcgguaguua
(((((((((((((.((((((((.(((((.((((((((((((.(((((((((((((((((((.((((((((.......)))))))).))))))))))))))))))).)))))))))))).))))).)))))))).)))))))))))))

Structure

             c        a     u            A                   c        ug 
uaacuaccgcagu aagauagc guaac uccgcUAUCAAG UAGCUGUAACUuccgcuau aagauagc  u
||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||  a
auugauggcguua uuuuaucg cauug aggcgaUAGUUC AUCGACAUUGAAGGCGAua uucuaucg  a
             a        a     c            C                   a        uc 

Annotation confidence Low

Genome context

Chr4: 27044910-27045056 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7526j

Mature lja-miR7526j-5p

• Accession: MIMAT0054641
• Description: Lotus japonicus lja-miR7526j-5p mature miRNA
• Sequence: 35 - UAUCAAGAUAGCUGUAACU - 53
• Evidence: experimental ; unknown

Mature lja-miR7526j-3p

• Accession: MIMAT0043760
• Description: Lotus japonicus lja-miR7526j-3p mature miRNA
• Sequence: 89 - AGCGGAAGUUACAGCUACCUUGAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256