Stem-loop lja-MIR11072e

Accession

MI0035759

Description

Lotus japonicus lja-MIR11072e precursor miRNA

Sequence

uaaaauuaaggguuaauccucuacuuggucccugugguuguguggccaucugaaauuagucccuccccgaaaaaucugaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgucggagggacuaauuuccacacacuuuccaaacccgagaacuuagauuuucagauuuuccggggAGGGACUAAUUUCAGACGGCcacacaaccacagggaccaaguagaggauuaucccuaaaauuaagua
........((((.((((((((((((((((((((((((((((((((((.(((((((((((((((((((((.(((((((((((((((((((.((((.(((((..((((((((((.....(((((((....)).)))))......)))))))))).))))).)))).))))))))))))))))))).))))))))))))))))))))).)))))))))))))))))))))))))))))))))).))))...........

Structure

---uaaaauua    u                                  a                     a                   c    c     aa          -uagca     -  g 
           aggg uaauccucuacuuggucccugugguuguguggcc ucugaaauuagucccuccccg aaaaucugaaaaucuaagu cucg guuug  aaagugugug      ggucc uc u
           |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |||||  ||||||||||      ||||| ||  
           uccc auuaggagaugaaccagggacaccaacacacCGG AGACUUUAAUCAGGGAggggc uuuuagacuuuuagauuca gagc caaac  uuucacacac      ucagg ag c
augaauuaaaa    u                                  C                     c                   a    c     -c          cuuuaa     g  g 

Annotation confidence Not enough data

Genome context

Chr2: 26431063-26431318 [+]

Mature lja-miR11072e-3p

• Accession: MIMAT0043730
• Description: Lotus japonicus lja-miR11072e-3p mature miRNA
• Sequence: 190 - AGGGACUAAUUUCAGACGGC - 209
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256