Stem-loop lja-MIR11070

Accession

MI0035742

Description

Lotus japonicus lja-MIR11070 precursor miRNA

Sequence

cuuuuuGGAGGCCCUGGGCUGUGGGucugcuugcacaagcccagggcccacagcccagggccggcccugag
......((.(((((((((((((((((((((((....))))...)))))))))))))))))))..)).....

Structure

cuuuuu  -A                   ---    g 
      GG  GGCCCUGGGCUGUGGGucu   gcuu c
      ||  |||||||||||||||||||   ||||  
      cc  ccgggacccgacacccggg   cgaa a
-gaguc  gg                   acc    c 

Annotation confidence Not enough data

Genome context

Chr4: 13560609-13560679 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11070

Mature lja-miR11070-5p

• Accession: MIMAT0043709
• Description: Lotus japonicus lja-miR11070-5p mature miRNA
• Sequence: 7 - GGAGGCCCUGGGCUGUGGG - 25
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256