miRBase entry: eel-mir-11059

Stem-loop eel-mir-11059


Accession
MI0035726
Description
Electrophorus electricus eel-mir-11059 precursor miRNA


Sequence

auaucauuggcauuagcuugAAUGAUCUUAGUCAUCUUUAUauuaaguuauagccaUAAAGAGGACAAAGGCCAUUCUggca
...............(((.(((((.((((.(((.(((((((..............))))))).))).)))).))))).))).

Structure
auaucauuggcauua   u     A    A   A       auuaag 
               gcu gAAUG UCUU GUC UCUUUAU      u
               ||| ||||| |||| ||| |||||||       
               cgg CUUAC GGAA CAG AGAAAUa      u
--------------a   U     C    A   G       ccgaua 


Annotation confidence Not enough data
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Genome context
scaffold586: 418045-418126 [+]

Database links

Mature eel-miR-11059-5p

Accession MIMAT0043683
Description Electrophorus electricus eel-miR-11059-5p mature miRNA
Sequence 21 - AAUGAUCUUAGUCAUCUUUAU - 41
Evidence experimental
Illumina [1]

Mature eel-miR-11059-3p

Accession MIMAT0043684
Description Electrophorus electricus eel-miR-11059-3p mature miRNA
Sequence 57 - UAAAGAGGACAAAGGCCAUUCU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25887781
    Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus)
    Traeger LL, Volkening JD, Moffett H, Gallant JR, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon H, Sussman MR, Samanta MP
    BMC Genomics (2015) 16:243