miRBase entry: eel-mir-11050

Stem-loop eel-mir-11050


Accession
MI0035715
Description
Electrophorus electricus eel-mir-11050 precursor miRNA


Sequence

caugaaauGUGCGAUGAUGACUACUUUCUgcugagguuacaaccagugaaccUAAUAGCAUGUAUUACCUGAGCacaugu
......((((((...(.(((.(((....((((((((((((.....))).))))..))))).)))))).)...))))))..

Structure
caugaa      GAU A   C   UUUC     --    -   a 
      auGUGC   G UGA UAC    Ugcug  aggu uac a
      ||||||   | ||| |||    |||||  |||| ||| c
      uacaCG   C AUU AUG    ACGAU  Ucca gug c
----ug      AGU C   -   ---U     AA    a   a 


Annotation confidence Not enough data
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Genome context
scaffold9098: 78872-78951 [+]

Database links

Mature eel-miR-11050-5p

Accession MIMAT0043664
Description Electrophorus electricus eel-miR-11050-5p mature miRNA
Sequence 9 - GUGCGAUGAUGACUACUUUCU - 29
Evidence experimental
Illumina [1]

Mature eel-miR-11050-3p

Accession MIMAT0043665
Description Electrophorus electricus eel-miR-11050-3p mature miRNA
Sequence 53 - UAAUAGCAUGUAUUACCUGAGC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25887781
    Unique patterns of transcript and miRNA expression in the South American strong voltage electric eel (Electrophorus electricus)
    Traeger LL, Volkening JD, Moffett H, Gallant JR, Chen PH, Novina CD, Phillips GN Jr, Anand R, Wells GB, Pinch M, Güth R, Unguez GA, Albert JS, Zakon H, Sussman MR, Samanta MP
    BMC Genomics (2015) 16:243