Stem-loop oni-mir-181c-1

Accession

MI0035468

Description

Oreochromis niloticus oni-mir-181c-1 precursor miRNA

Literature search

2 open access papers mention oni-mir-181c-1
(3 sentences)

Sequence

33451340 reads, 32616.0 reads per million, 115 experiments

AACAUUCAACGCUGUCGGUGAGUUugagcucugacugaaaACCAUCGACCGUUGACUGUACC
.(((.((((((..(((((((..(((.((......)).)))..))))))))))))).)))...

Structure

--A   U      CU       AG   g  cu 
   ACA UCAACG  GUCGGUG  UUu ag  c
   ||| ||||||  |||||||  ||| ||   
   UGU AGUUGC  CAGCUAC  aaa uc  u
CCA   C      --       CA   g  ag 

Annotation confidence High

Genome context

CM001455.1: 964919-964980 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-181c-1

Mature oni-miR-181c-5p

• Accession: MIMAT0043428
• Description: Oreochromis niloticus oni-miR-181c-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGUU - 24
• Evidence: experimental ; Illumina [1]

Mature oni-miR-181c-3p

• Accession: MIMAT0059746
• Description: Oreochromis niloticus oni-miR-181c-3p mature miRNA
• Sequence: 41 - ACCAUCGACCGUUGACUGUACC - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774