miRBase entry: oni-mir-10653-1

Stem-loop oni-mir-10653-1

Accession

MI0035169

Description

Oreochromis niloticus oni-mir-10653-1 precursor miRNA

Sequence

AUACUGGUCUGCAGCUGCUGGucuuucuucuugguccagcagcacaugaaccaguucucc
..(((((((....((((((((.((........)).))))))))....).)))))).....

Structure

---AU      - UGCA        u  uuc 
     ACUGGU C    GCUGCUGG cu   u
     |||||| |    |||||||| ||    
     ugacca g    cgacgacc gg   u
ccucu      a uaca        u  uuc

Annotation confidence Not enough data

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Genome context

CM001457.1: 31393527-31393586 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10653-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10653

Accession	MIMAT0043147
Description	Oreochromis niloticus oni-miR-10653 mature miRNA
Sequence	1 - AUACUGGUCUGCAGCUGCUGG - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774