Stem-loop egr-mir-7b

Accession

MI0035041

Description

Echinococcus granulosus egr-mir-7b precursor miRNA

Literature search

1 open access papers mention egr-mir-7b
(4 sentences)

Sequence

UGGAAGACUUGUGAUUAGAUUGUUacgcauauucccuuuugugaucauguaaaugagaagcaaaugaaccucuuaaCAACUAUCACGGUCUUCCAAG
(((((((((.(((((.((.((((((.(....(((...(((((..((((....))))...))))).)))...).))))))))))))))))))))))..

Structure

--         U     U  A      c caua   ccu     -ga    g 
  UGGAAGACU GUGAU AG UUGUUa g    uuc   uuugu   ucau u
  ||||||||| ||||| || |||||| |    |||   |||||   ||||  
  ACCUUCUGG CACUA UC AACaau c    aag   aaacg   agua a
GA         -     -  -      u -ucc   --u     aag    a 

Annotation confidence Not enough data

Genome context

APAU02000006.1: 1743289-1743385 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from egr-mir-7b

Mature egr-miR-7b-5p

• Accession: MIMAT0043036
• Description: Echinococcus granulosus egr-miR-7b-5p mature miRNA
• Sequence: 1 - UGGAAGACUUGUGAUUAGAUUGUU - 24
• Evidence: experimental ; Illumina [1]

Mature egr-miR-7b-3p

• Accession: MIMAT0043037
• Description: Echinococcus granulosus egr-miR-7b-3p mature miRNA
• Sequence: 77 - CAACUAUCACGGUCUUCCAAG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83