miRBase entry: pny-mir-301a

Stem-loop pny-mir-301a


Accession
MI0035001
Description
Pundamilia nyererei pny-mir-301a precursor miRNA


Sequence

250 reads, 19.0 reads per million, 7 experiments
GCUCUGACUUCAUUGCACUACUGuaucagacaacuagUAGUGCAAUAGUAUUGUCAAAGC
(((.((((..((((((((((((((........)).))))))))))).)....)))).)))

Structure
   C    --UU -           -  auc 
GCU UGAC    C AUUGCACUACU Gu   a
||| ||||    | ||||||||||| ||    
CGA ACUG    G UAACGUGAUga ca   g
   A    UUAU A           u  aca 


Annotation confidence High
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Genome context
JH419805.1: 127410-127469 [+]

Database links

Mature pny-miR-301a-5p

Accession MIMAT0060407
Description Pundamilia nyererei pny-miR-301a-5p mature miRNA
Sequence 1 - GCUCUGACUUCAUUGCACUACUG - 23
Evidence experimental
Illumina [1]

Mature pny-miR-301a-3p

Accession MIMAT0042996
Description Pundamilia nyererei pny-miR-301a-3p mature miRNA
Sequence 38 - UAGUGCAAUAGUAUUGUCAAAGC - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381