Stem-loop pny-mir-135d

Accession

MI0034991

Description

Pundamilia nyererei pny-mir-135d precursor miRNA

Sequence

2636 reads, 201.0 reads per million, 7 experiments

UAUGGCUUUUUAUUCCUACGUGAugguagauggguucAUGUAGGAGUAGAAGCCACU
..((((((((.((((((((((((............))))))))))))))))))))..

Structure

UA        U            uggua 
  UGGCUUUU AUUCCUACGUGA     g
  |||||||| ||||||||||||      
  ACCGAAGA UGAGGAUGUAcu     a
UC        -            ugggu 

Annotation confidence High

Genome context

JH419219.1: 5783163-5783219 [+]

Mature pny-miR-135d-5p

• Accession: MIMAT0042986
• Description: Pundamilia nyererei pny-miR-135d-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUACGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-135d-3p

• Accession: MIMAT0060401
• Description: Pundamilia nyererei pny-miR-135d-3p mature miRNA
• Sequence: 38 - AUGUAGGAGUAGAAGCCACU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381