Stem-loop pny-mir-29b

Accession

MI0034972

Description

Pundamilia nyererei pny-mir-29b precursor miRNA

Literature search

1 open access papers mention pny-mir-29b
(4 sentences)

Sequence

57 reads, 5.0 reads per million, 7 experiments

gcugguuucagaugguggcuuagaguauugucaucuaucUAGCACCAUUUGAAAUCAGUGU
(((((((((((((((((.((((((.........))))...)))))))))))))))))))..

Structure

--                 g  ---    gua 
  gcugguuucagauggug cu   uaga   u
  ||||||||||||||||| ||   ||||   u
  UGACUAAAGUUUACCAC GA   aucu   g
UG                 -  Ucu    acu 

Annotation confidence Not enough data

Genome context

JH419440.1: 754038-754098 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-29b

Mature pny-miR-29b-3p

• Accession: MIMAT0042969
• Description: Pundamilia nyererei pny-miR-29b-3p mature miRNA
• Sequence: 40 - UAGCACCAUUUGAAAUCAGUGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381