Stem-loop pny-mir-24a-2

Accession

MI0034914

Description

Pundamilia nyererei pny-mir-24a-2 precursor miRNA

Sequence

13792 reads, 1198.0 reads per million, 7 experiments

UGCCUGCUGUGCUGAUAAUCAGUgugugacgucggcUGGCUCAGUUCAGCAGGAACAG
..(((((((.(((((...(((((...........))))).))))).))))))).....

Structure

---UG       U     UAA     gugu 
     CCUGCUG GCUGA   UCAGU    g
     ||||||| |||||   |||||    a
     GGACGAC UGACU   GGUcg    c
GACAA       U     --C     gcug 

Annotation confidence High

Genome context

JH419264.1: 1066765-1066822 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-24a-2

Mature pny-miR-24a-2-5p

• Accession: MIMAT0060358
• Description: Pundamilia nyererei pny-miR-24a-2-5p mature miRNA
• Sequence: 1 - UGCCUGCUGUGCUGAUAAUCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature pny-miR-24a-3p

• Accession: MIMAT0042935
• Description: Pundamilia nyererei pny-miR-24a-3p mature miRNA
• Sequence: 37 - UGGCUCAGUUCAGCAGGAACAG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381