Stem-loop pny-mir-301b-1

Accession

MI0034887

Description

Pundamilia nyererei pny-mir-301b-1 precursor miRNA

Sequence

1032 reads, 77.0 reads per million, 7 experiments

CUUUGACAAUGUUGCACUACUguaccauccauucuagCAGUGCAAUAGUAUUGUCAUAGC
((.(((((((((((((((.(((............))).))))))))...))))))).)).

Structure

-  U       ---        A   uacca 
 CU UGACAAU   GUUGCACU CUg     u
 || |||||||   |||||||| |||      
 GA ACUGUUA   UAACGUGA gau     c
C  U       UGA        C   cuuac 

Annotation confidence High

Genome context

JH419268.1: 1907443-1907502 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-301b-1

Mature pny-miR-301b-1-5p

• Accession: MIMAT0060338
• Description: Pundamilia nyererei pny-miR-301b-1-5p mature miRNA
• Sequence: 1 - CUUUGACAAUGUUGCACUACU - 21
• Evidence: experimental ; Illumina [1]

Mature pny-miR-301b-1-3p

• Accession: MIMAT0042911
• Description: Pundamilia nyererei pny-miR-301b-1-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381