Stem-loop pny-mir-20a-2

Accession

MI0034884

Description

Pundamilia nyererei pny-mir-20a-2 precursor miRNA

Sequence

UAAAGUGCUUAUAGUGCAGGUAGucuucuuacuguuuaaauucuacugcaaugugagcacuucaagu
..(((((((((((.(((((.(((...................)))))))).))))))))))).....

Structure

---UA           G     G   ucuucuua 
     AAGUGCUUAUA UGCAG UAG        c
     ||||||||||| ||||| |||        u
     uucacgagugu acguc auc        g
ugaac           a     -   uuaaauuu 

Annotation confidence Not enough data

Genome context

JH419214.1: 5902505-5902571 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from pny-mir-20a-2

Mature pny-miR-20a

• Accession: MIMAT0042908
• Description: Pundamilia nyererei pny-miR-20a mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381