Stem-loop oni-mir-130b

Accession

MI0034765

Description

Oreochromis niloticus oni-mir-130b precursor miRNA

Literature search

1 open access papers mention oni-mir-130b
(1 sentences)

Sequence

ACUCUUUCCCUGUUGCACUACUgugggagaugcagcaagCAGUGCAAUAAUGAAAGGGCAU
.(((((((..(((((((((.((((.(......).)).)).)))))))))..)))))))...

Structure

--A       CC         A  -  g ga 
   CUCUUUC  UGUUGCACU CU gu g  g
   |||||||  ||||||||| || || |   
   GGGAAAG  AUAACGUGA ga cg c  a
UAC       UA         C  a  a gu 

Annotation confidence Not enough data

Genome context

CM001455.1: 2078402-2078462 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-130b

Mature oni-miR-130b-5p

• Accession: MIMAT0042825
• Description: Oreochromis niloticus oni-miR-130b-5p mature miRNA
• Sequence: 1 - ACUCUUUCCCUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-130b-3p

• Accession: MIMAT0042826
• Description: Oreochromis niloticus oni-miR-130b-3p mature miRNA
• Sequence: 40 - CAGUGCAAUAAUGAAAGGGCAU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774