Stem-loop oni-mir-219a

Accession

MI0034759

Description

Oreochromis niloticus oni-mir-219a precursor miRNA

Sequence

UGAUUGUCCAAACGCAAUUCUUGugaaauuucaaauccaacccgAGAAUUGUGCCUGGACAUCUGU
.(((.(((((..((((((((((((((....))).........)))))))))))..))))))))...

Structure

--U   U     AA           ---------   a 
   GAU GUCCA  CGCAAUUCUUG         uga a
   ||| |||||  |||||||||||         |||  
   CUA CAGGU  GUGUUAAGAgc         acu u
UGU   -     CC           ccaaccuaa   u 

Annotation confidence Not enough data

Genome context

CM001455.1: 29502993-29503058 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-219a

Mature oni-miR-219a-5p

• Accession: MIMAT0042814
• Description: Oreochromis niloticus oni-miR-219a-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUUG - 23
• Evidence: experimental ; Illumina [2]

Mature oni-miR-219a-3p

• Accession: MIMAT0042815
• Description: Oreochromis niloticus oni-miR-219a-3p mature miRNA
• Sequence: 45 - AGAAUUGUGCCUGGACAUCUGU - 66
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774