Stem-loop oni-mir-27d

Accession

MI0034636

Description

Oreochromis niloticus oni-mir-27d precursor miRNA

Literature search

1 open access papers mention oni-mir-27d
(1 sentences)

Sequence

UAGAGCUUAGUUGACUGCUGAACagggagucuugaauauuugUUCACAGUGGCUAAGUUCGUC
..((((((((((.((((.((((((((............))))))))))))))))))))))...

Structure

-UA          G    C        gaguc 
   GAGCUUAGUU ACUG UGAACagg     u
   |||||||||| |||| ||||||||      
   CUUGAAUCGG UGAC ACUUguuu     u
CUG          -    -        auaag 

Annotation confidence Not enough data

Genome context

CM001450.1: 30915106-30915168 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from oni-mir-27d

Mature oni-miR-27d-5p

• Accession: MIMAT0042721
• Description: Oreochromis niloticus oni-miR-27d-5p mature miRNA
• Sequence: 1 - UAGAGCUUAGUUGACUGCUGAAC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-27d-3p

• Accession: MIMAT0042722
• Description: Oreochromis niloticus oni-miR-27d-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCGUC - 63
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774