Stem-loop oni-mir-206

Accession

MI0034605

Description

Oreochromis niloticus oni-mir-206 precursor miRNA

Literature search

4 open access papers mention oni-mir-206
(15 sentences)

Sequence

83401429 reads, 85424.0 reads per million, 108 experiments

ACAUGCUUCCUUAUAUCCCCAUAuuaauacgccacuuaUGGAAUGUAAGGAAGUGUGUGG
((((((((((((((((..(((((.............))))).))))))))))))))))..

Structure

--                CC     uuaau 
  ACAUGCUUCCUUAUAU  CCAUA     a
  ||||||||||||||||  |||||     c
  UGUGUGAAGGAAUGUA  GGUau     g
GG                -A     ucacc 

Annotation confidence High

Genome context

CM001458.1: 17340341-17340400 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-206

Mature oni-miR-206-5p

• Accession: MIMAT0059363
• Description: Oreochromis niloticus oni-miR-206-5p mature miRNA
• Sequence: 1 - ACAUGCUUCCUUAUAUCCCCAUA - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-206-3p

• Accession: MIMAT0042696
• Description: Oreochromis niloticus oni-miR-206-3p mature miRNA
• Sequence: 39 - UGGAAUGUAAGGAAGUGUGUGG - 60
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774