miRBase entry: oni-mir-222-2

Stem-loop oni-mir-222-2

Accession

MI0034569

Description

Oreochromis niloticus oni-mir-222-2 precursor miRNA

Literature search

1 open access papers mention oni-mir-222-2
(1 sentences)

Sequence

ugcucaguaggcaguguagauccuguguagcaaucagcAGCUACAUCUGGCUACUGGGUCUC
.(((((((((.((((((((...(((.........)))...))))).))).)))))))))...

Structure

--u         g   -     auc   ugu 
   gcucaguag cag uguag   cug   a
   ||||||||| ||| |||||   |||   g
   UGGGUCAUC GUC ACAUC   gac   c
CUC         G   U     GAc   uaa

Annotation confidence Not enough data

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Genome context

CM001459.1: 4101993-4102054 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-222-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-222

Accession	MIMAT0042670
Description	Oreochromis niloticus oni-miR-222 mature miRNA
Sequence	39 - AGCUACAUCUGGCUACUGGGUCUC - 62
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774