Stem-loop oni-let-7d-1

Accession

MI0034558

Description

Oreochromis niloticus oni-let-7d-1 precursor miRNA

Literature search

4 open access papers mention oni-let-7d-1
(21 sentences)

Sequence

UGAGGUAGUUGGUUGUAUGGUUucgcauaauaaauagcacggagauaacuguacaaccuucuagcuuucc
.(((.(((..((((((((((((((...................)).))))))))))))..))).)))...

Structure

--U   G   UU            -  gcauaaua 
   GAG UAG  GGUUGUAUGGUU uc        a
   ||| |||  |||||||||||| ||        a
   uuc auc  ccaacaugucaa ag        u
ccu   g   uu            u  aggcacga 

Annotation confidence Not enough data

Genome context

GL831431.1: 207596-207665 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-let-7d-1

Mature oni-let-7d

• Accession: MIMAT0042661
• Description: Oreochromis niloticus oni-let-7d mature miRNA
• Sequence: 1 - UGAGGUAGUUGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774