Stem-loop nbr-let-7i-1

Accession

MI0034354

Description

Neolamprologus brichardi nbr-let-7i-1 precursor miRNA

Sequence

30437 reads, 1676.0 reads per million, 7 experiments

UGAGGUAGUAGUUUGUGCUGUUgguuggguugagacacugcccgcuauggagaugaCUGCGCAAGCUACUGCCUUGCU
.(((((((((((((((((.((((((.((((.........)))))))........))).)))))))))))))))))...

Structure

--U                 U   --------   u    uga 
   GAGGUAGUAGUUUGUGC GUU        ggu gggu   g
   ||||||||||||||||| |||        ||| ||||   a
   UUCCGUCAUCGAACGCG Cag        ucg cccg   c
UCG                 U   uagaggua   -    uca 

Annotation confidence Not enough data

Genome context

JH422276.1: 12539479-12539556 [-]

Mature nbr-let-7i-5p

• Accession: MIMAT0042515
• Description: Neolamprologus brichardi nbr-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-let-7i-1-3p

• Accession: MIMAT0060150
• Description: Neolamprologus brichardi nbr-let-7i-1-3p mature miRNA
• Sequence: 57 - CUGCGCAAGCUACUGCCUUGCU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381