miRBase entry: mze-mir-449b

Stem-loop mze-mir-449b


Accession
MI0034251
Description
Metriaclima zebra mze-mir-449b precursor miRNA


Sequence

UGGCAGUGUAAUGUUAGCUGACguuucuucagccagcucacacugcucugcuacu
((((((.(((.(((.(((((.(.........).))))).))).))).))))))..

Structure
--      U   A   U     A guu 
  UGGCAG GUA UGU AGCUG C   u
  |||||| ||| ||| ||||| |   c
  aucguc cgu aca ucgac g   u
uc      u   c   c     c acu 


Annotation confidence Not enough data
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Genome context
AGTA03000061.1: 1647014-1647068 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-449b

Accession MIMAT0042447
Description Metriaclima zebra mze-miR-449b mature miRNA
Sequence 1 - UGGCAGUGUAAUGUUAGCUGAC - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381