miRBase entry: mze-mir-15c

Stem-loop mze-mir-15c

Accession

MI0034247

Description

Metriaclima zebra mze-mir-15c precursor miRNA

Sequence

UAGCAGCACAUCAUGUUUUGCAgaugugcugaaucgcuuCAAAUCAUCAUGUGCUGCCACC
..(((((((((.(((.((((.((.((........)))).)))).))).)))))))))....

Structure

--UA         C   U    C  a  ugc 
    GCAGCACAU AUG UUUG Ag ug   u
    ||||||||| ||| |||| || ||    
    CGUCGUGUA UAC AAAC uc gc   g
CCAC         C   U    u  -  uaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

AGTA03000382.1: 442986-443046 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-15c-5p

Accession	MIMAT0042443
Description	Metriaclima zebra mze-miR-15c-5p mature miRNA
Sequence	1 - UAGCAGCACAUCAUGUUUUGCA - 22
Evidence	experimental Illumina [1]

Mature mze-miR-15c-3p

Accession	MIMAT0042444
Description	Metriaclima zebra mze-miR-15c-3p mature miRNA
Sequence	40 - CAAAUCAUCAUGUGCUGCCACC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381