miRBase entry: mze-mir-212b

Stem-loop mze-mir-212b


Accession
MI0034239
Description
Metriaclima zebra mze-mir-212b precursor miRNA


Sequence

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacaguaacagucuacagucauggcu
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure
-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  gg acuga aucugac aaugac    aug   c
uc  u     c       -      ----   aaa 


Annotation confidence Not enough data
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Genome context
AGTA03000075.1: 717737-717803 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mze-mir-212b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-212b

Accession MIMAT0042433
Description Metriaclima zebra mze-miR-212b mature miRNA
Sequence 1 - ACCUUGGCUUUAGACUGCUUACU - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381