miRBase entry: mze-mir-125c

Stem-loop mze-mir-125c

Accession

MI0034238

Description

Metriaclima zebra mze-mir-125c precursor miRNA

Sequence

ucccugagacccuaacuugugacguugugcuuucauguccACGGGUUAGGCUCUCGGGAGCU
..(((((((.(((((((((((((((.(......))))).))))))))))).)))))))....

Structure

--uc       c           -    u ug 
    ccugaga ccuaacuugug acgu g  c
    ||||||| ||||||||||| |||| |   
    GGGCUCU GGAUUGGGCAc ugua c  u
UCGA       C           c    - uu

Annotation confidence Not enough data

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Genome context

AGTA03000072.1: 2135822-2135883 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from mze-mir-125c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-125c

Accession	MIMAT0042432
Description	Metriaclima zebra mze-miR-125c mature miRNA
Sequence	41 - ACGGGUUAGGCUCUCGGGAGCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381