miRBase entry: mze-mir-196b

Stem-loop mze-mir-196b


Accession
MI0034220
Description
Metriaclima zebra mze-mir-196b precursor miRNA


Sequence

UAGGUAGUCUCAUGUUGUUGGGCuauauuauuucucccacaacacaaaacugccuuga
.(((((((....((((((.(((.............)))))))))....)))))))...

Structure
--U       CUCA      U   Cuaua 
   AGGUAGU    UGUUGU GGG     u
   |||||||    |||||| |||     u
   uccguca    acaaca ccc     a
agu       aaac      -   ucuuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
AGTA03000034.1: 1542507-1542564 [+]

Database links

Mature mze-miR-196b

Accession MIMAT0042414
Description Metriaclima zebra mze-miR-196b mature miRNA
Sequence 1 - UAGGUAGUCUCAUGUUGUUGGGC - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381