Stem-loop mze-mir-216a

Accession

MI0034214

Description

Metriaclima zebra mze-mir-216a precursor miRNA

Sequence

13806 reads, 490.0 reads per million, 7 experiments

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucuCACAAUGGCCUCUGGGAUUAUG
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   UUAGGGUC  CCG   ACACuc  cg   a
GUA        -U   GUA      -u  ucg 

Annotation confidence High

Genome context

AGTA03000178.1: 2819041-2819103 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-216a

Mature mze-miR-216a-5p

• Accession: MIMAT0042410
• Description: Metriaclima zebra mze-miR-216a-5p mature miRNA
• Sequence: 1 - AAAUCUCAGCUGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-216a-3p

• Accession: MIMAT0060042
• Description: Metriaclima zebra mze-miR-216a-3p mature miRNA
• Sequence: 42 - CACAAUGGCCUCUGGGAUUAUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381