miRBase entry: mze-mir-18b

Stem-loop mze-mir-18b

Accession

MI0034212

Description

Metriaclima zebra mze-mir-18b precursor miRNA

Sequence

UAAGGUGCAUCUAGUGUAGUUGgugaaguauucaaagucuacugcccuaguugccccuucugu
.((((.(((.((((.(((((.((((((...))))...)).))))).)))).))).))))....

Structure

---U    U   U    U     U  ---    g 
    AAGG GCA CUAG GUAGU Gg   ugaa  
    |||| ||| |||| ||||| ||   |||| u
    uucc cgu gauc cguca cu   acuu  
uguc    c   u    c     u  gaa    a

Annotation confidence Not enough data

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Genome context

AGTA03000179.1: 1744018-1744080 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-18b

Accession	MIMAT0042408
Description	Metriaclima zebra mze-miR-18b mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGUAGUUG - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381