miRBase entry: mze-mir-29b-1

Stem-loop mze-mir-29b-1

Accession

MI0034206

Description

Metriaclima zebra mze-mir-29b-1 precursor miRNA

Sequence

cugguuucacguggugguuuagaugugugcugcucuugucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((..((((((..(.......)..)))))))))))).)))))))))....

Structure

----         c      gu      gu ug 
    cugguuuca guggug  uuagau  g  c
    ||||||||| ||||||  ||||||  |  u
    GACUAAAGU UACCAC  GAUcug  c  g
UUGU         U      --      uu uc

Annotation confidence Not enough data

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Genome context

AGTA03000610.1: 581-643 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-29b

Accession	MIMAT0042402
Description	Metriaclima zebra mze-miR-29b mature miRNA
Sequence	41 - UAGCACCAUUUGAAAUCAGUGUU - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381