miRBase entry: mze-mir-193

Stem-loop mze-mir-193

Accession

MI0034175

Description

Metriaclima zebra mze-mir-193 precursor miRNA

Sequence

ugggucuuugcgggcaaggugaguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure

--    u     c    a  g     ccu 
  uggg cuuug gggc ag ugagu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu

Annotation confidence Not enough data

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Genome context

AGTA03000004.1: 480015-480073 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-193

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-193

Accession	MIMAT0042391
Description	Metriaclima zebra mze-miR-193 mature miRNA
Sequence	38 - AACUGGCCUACAAAGUCCCAGU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381