miRBase entry: mze-mir-727

Stem-loop mze-mir-727

Accession

MI0034168

Description

Metriaclima zebra mze-mir-727 precursor miRNA

Sequence

UCAGUCUUCAAUUCCUCCCAGCccauuacuauggaaacugugaguugaggcgaguugaagacu
..(((((((((((((((.(((.((((....))))...))).))).......))))))))))))

Structure

UC            -------   C   --C    u 
  AGUCUUCAAUUC       CUC CAG   ccau a
  ||||||||||||       ||| |||   ||||  
  ucagaaguugag       gag guc   ggua c
--            cggaguu   u   aaa    u

Annotation confidence Not enough data

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Genome context

AGTA03000234.1: 823226-823288 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mze-mir-727

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-727

Accession	MIMAT0042383
Description	Metriaclima zebra mze-miR-727 mature miRNA
Sequence	1 - UCAGUCUUCAAUUCCUCCCAGC - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381