Stem-loop mze-mir-20b

Accession

MI0034167

Description

Metriaclima zebra mze-mir-20b precursor miRNA

Sequence

8451 reads, 295.0 reads per million, 7 experiments

CAAAGUGCUCACAGUGCAGGUAguaaacguucaucuACUGCAGUUUGUGCACUUGGGGU
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure

---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     UUCACG GU U ACGUC Auc    u
UGGGG      U  U G     -   uacu 

Annotation confidence High

Genome context

AGTA03000179.1: 1743542-1743600 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-20b

Mature mze-miR-20b-5p

• Accession: MIMAT0042382
• Description: Metriaclima zebra mze-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature mze-miR-20b-3p

• Accession: MIMAT0060017
• Description: Metriaclima zebra mze-miR-20b-3p mature miRNA
• Sequence: 37 - ACUGCAGUUUGUGCACUUGGGGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381