miRBase entry: mze-mir-20b

Stem-loop mze-mir-20b


Accession
MI0034167
Description
Metriaclima zebra mze-mir-20b precursor miRNA


Sequence

CAAAGUGCUCACAGUGCAGGUAguaaacguucaucuacugcaguuugugcacuuggggu
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure
---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     uucacg gu u acguc auc    u
ugggg      u  u g     -   uacu 


Annotation confidence Not enough data
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Genome context
AGTA03000179.1: 1743542-1743600 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-20b

Accession MIMAT0042382
Description Metriaclima zebra mze-miR-20b mature miRNA
Sequence 1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381