miRBase entry: mze-mir-19a

Stem-loop mze-mir-19a

Accession

MI0034149

Description

Metriaclima zebra mze-mir-19a precursor miRNA

Sequence

aguuuugcguaguugcgcugcaagaagaaauaaguUGUGCAAAUCUAUGCAAAACUG
((((((((((((((((((.((............)).))))))..)))))))))))).

Structure

-            --      u  aagaa 
 aguuuugcguag  uugcgc gc     g
 ||||||||||||  |||||| ||      
 UCAAAACGUAUC  AACGUG ug     a
G            UA      U  aauaa

Annotation confidence Not enough data

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Genome context

AGTA03000134.1: 1275615-1275671 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mze-mir-19a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-19a

Accession	MIMAT0042368
Description	Metriaclima zebra mze-miR-19a mature miRNA
Sequence	36 - UGUGCAAAUCUAUGCAAAACUG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381