miRBase entry: mze-mir-20a-1

Stem-loop mze-mir-20a-1


Accession
MI0034131
Description
Metriaclima zebra mze-mir-20a-1 precursor miRNA


Sequence

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuacugcaauguaagcacuugaagu
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure
---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     uucacgaaugu acguc      cacg  
ugaag           a     aucuaa    u 


Annotation confidence Not enough data
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Genome context
AGTA03000036.1: 4187837-4187897 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-20a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-20a

Accession MIMAT0042358
Description Metriaclima zebra mze-miR-20a mature miRNA
Sequence 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381