miRBase entry: mze-mir-19d

Stem-loop mze-mir-19d


Accession
MI0034129
Description
Metriaclima zebra mze-mir-19d precursor miRNA


Sequence

agcuuugcagggugggcagucagccugugugcauaaggaccagcUGUGCAAACCCAUGCAAAACUG
((.((((((((((..(((..((((.((.((.(....).)))))))))))..)))).)))))).)).

Structure
-  c      -    gg   gu    c  u  g a 
 ag uuugca gggu  gca  cagc ug gu c u
 || |||||| ||||  |||  |||| || || |  
 UC AAACGU CCCA  CGU  GUcg ac ca g a
G  A      A    AA   --    -  -  g a 


Annotation confidence Not enough data
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Genome context
AGTA03000037.1: 128692-128757 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mze-mir-19d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-19d

Accession MIMAT0042356
Description Metriaclima zebra mze-miR-19d mature miRNA
Sequence 45 - UGUGCAAACCCAUGCAAAACUG - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381