miRBase entry: mze-mir-19b-1

Stem-loop mze-mir-19b-1

Accession

MI0034127

Description

Metriaclima zebra mze-mir-19b-1 precursor miRNA

Sequence

aguuuugcugguuugcauucagcuuuaaugguguuugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((((..((((.............)))))))))).))).)))))))).

Structure

-        -   -      uu    uuuaa 
 aguuuugc ugg uuugca  cagc     u
 |||||||| ||| ||||||  ||||     g
 UCAAAACG ACC AAACGU  GUcg     g
G        U   U      --    uuugu

Annotation confidence Not enough data

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Genome context

AGTA03000036.1: 4187961-4188020 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mze-mir-19b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mze-miR-19b

Accession	MIMAT0042355
Description	Metriaclima zebra mze-miR-19b mature miRNA
Sequence	39 - UGUGCAAAUCCAUGCAAAACUG - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381