miRBase entry: mze-mir-23b

Stem-loop mze-mir-23b


Accession
MI0034126
Description
Metriaclima zebra mze-mir-23b precursor miRNA


Sequence

aggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure
-ag           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu 


Annotation confidence Not enough data
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Genome context
AGTA03000056.1: 3235823-3235880 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-23b

Accession MIMAT0042354
Description Metriaclima zebra mze-miR-23b mature miRNA
Sequence 38 - AUCACAUUGCCAGGGAUUACC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381