miRBase entry: mze-mir-27e-1

Stem-loop mze-mir-27e-1


Accession
MI0034122
Description
Metriaclima zebra mze-mir-27e-1 precursor miRNA


Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure
--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc 


Annotation confidence Not enough data
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Genome context
AGTA03000280.1: 168868-168931 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mze-mir-27e-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mze-miR-27e

Accession MIMAT0042350
Description Metriaclima zebra mze-miR-27e mature miRNA
Sequence 44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381